A recent study by Founou et al. (2025) titled “Enable, empower, succeed: a bioinformatics workshop harnessing open web-based tools for surveillance of bacterial antimicrobial resistance,” published in BMC microbiology by Springer Nature, reveals that the workshop significantly improved participants’ bioinformatics skills, confidence, and motivation, demonstrating effective capacity-building in resource-limited settings.
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A short, targeted bioinformatics workshop significantly improved participants’ skills, confidence, and capacity for AMR surveillance in resource-limited settings. -Founou et al. 2025
This study focuses on building human capacity for genomics research in resource-constrained settings, specifically to address antimicrobial resistance (AMR)—a critical global health challenge. It highlights a three-day bioinformatics workshop conducted in Cameroon, aimed at equipping local researchers and health professionals with foundational bioinformatics skills. Participants learned to use accessible, web-based tools for analyzing genomic data, including prediction of AMR, phylogenetic analysis, and more. The ultimate goal of the workshop was to empower researchers to perform genomic surveillance of AMR even in settings with limited infrastructure and resources.
The study emphasizes the importance of education, innovative training approaches, and regional collaboration to bridge gaps in bioinformatics expertise, especially in Africa. By leveraging open and freely available tools, the workshop proved effective in boosting participants’ confidence and skills in bioinformatics, ultimately contributing to AMR surveillance efforts.
How the Study was Conducted
To address the growing threat of antimicrobial resistance (AMR), a three-day bioinformatics workshop was organized in Cameroon, aimed at building local capacity for genomics research. Tailored for postgraduate students and professionals in the fields of biology and health sciences, the workshop focused on practical, learner-centered approaches designed specifically for resource-limited settings.
Workshop Planning and Preparation
The authors have undertaken comprehensive planning to ensure the workshop’s success, particularly in overcoming common challenges in low-resource environments. These included a shortage of trainers, language barriers, and infrastructure limitations. To tackle these, experienced bioinformatics trainers were recruited, bilingual facilitation (English and French) was provided, and accessible online tools were integrated into the training. Risk analysis and contingency plans were also developed to mitigate disruptions such as power outages and internet instability.
Participant Recruitment
An open call targeted researchers and health professionals with a background in biology and a demonstrated interest in AMR. From 86 applicants, 11 participants were selected based on academic merit, motivation to address AMR, and their potential to apply the acquired skills in their professional environments.
Curriculum and Learning Approach
The curriculum was designed to introduce participants to essential bioinformatics concepts and tools. Key topics included next-generation sequencing, phylogenetics, and the use of online bioinformatics resources. The training employed a mix of lectures, hands-on practical sessions, peer-to-peer learning, group discussions, and assessments to reinforce understanding and encourage collaboration.
Workshop Delivery and Execution
Conducted over three intensive days, the workshop required full attendance and active participation in practical assignments. To maximize accessibility, sessions were delivered in a hybrid format—both in-person and online—ensuring that all participants could benefit from the materials and instruction regardless of their location.
Impact Assessment and Evaluation
The authors assessed the effectiveness of the workshop through pre- and post-training surveys, which measured shifts in participants’ confidence and competence in key bioinformatics skills. In addition, feedback sessions and collaborative group projects provided valuable insights into the knowledge gained and its potential application in real-world research settings.
What the Authors Found
The study found that a short, well-structured, and learner-centered bioinformatics workshop can significantly enhance genomics research capacity in resource-limited settings by improving participants’ skills, confidence, and motivation to engage in AMR-related research.
Why is this important
Tackling AMR in Underprivileged Regions: AMR leads to treatment failures, increasing morbidity and mortality rates. In Western sub-Saharan Africa, 27.3 deaths per 100,000 lives are linked to AMR, yet surveillance and research are often inadequate.
Bridging the Knowledge Gap: Many regions lack trained professionals in genomics and bioinformatics, critical for studying AMR. This workshop helps fill that gap, providing foundational skills to local researchers and enabling them to actively contribute to global health efforts.
Promoting Sustainable Solutions: By utilizing freely accessible web-based tools, the workshop offers a cost-effective and scalable approach to capacity building, ensuring that even underfunded institutions can participate in genomic surveillance of AMR.
Global Health Security: AMR is a global problem, and without comprehensive surveillance in every region, it cannot be effectively contained. Strengthening capabilities in Africa contributes to the global effort against this crisis, benefiting all regions.
Long-Term Impact: The training not only enhances immediate skill sets but also inspires participants to continue their learning and even train others. This creates a ripple effect, gradually building a strong network of bioinformatics expertise.
What the Authors Recommended
Based on the outcomes of the workshop, the authors proposed several strategic recommendations to enhance bioinformatics capacity and support antimicrobial resistance (AMR) research in resource-constrained environments:
- While web-based tools are suitable for introductory training, advanced bioinformatics analyses demand more powerful computing capabilities. Collaborating with local institutions to develop and maintain cluster-based infrastructure can provide researchers with reliable access to the computational resources needed for complex genomic work.
- Short-term workshops are effective for foundational knowledge, but sustained training is necessary for deeper skill development. The authors recommend implementing extended training programs that cover intermediate and advanced bioinformatics topics, enabling participants to handle large-scale data analysis and sophisticated genomic research projects.
- Building networks with African and global institutions can create opportunities for mentorship, resource sharing, and collaborative research. Such partnerships enhance the learning experience and promote long-term professional development for participants.
- Establishing ongoing mentorship programs and encouraging the formation of communities of practice among participants can maintain momentum beyond the workshop. Supporting peer learning and enabling trained individuals to mentor others will help scale bioinformatics capacity across the region.
- Unstable internet access remains a significant barrier. The authors suggest adopting hybrid learning models, incorporating offline-capable tools, and exploring local connectivity solutions to ensure that participants can engage with training content effectively, even in low-bandwidth environments.
- To maximize engagement and inclusiveness, training materials and delivery should be both bilingual and culturally relevant. Providing resources in multiple languages—especially English and French—and considering local contexts ensures better comprehension and participation.
In conclusion, the bioinformatics workshop detailed by Founou et al. (2025) serves as a powerful model for enhancing genomics research capacity in resource-limited settings. By equipping local researchers with practical skills and accessible tools, the initiative not only strengthens regional efforts against antimicrobial resistance but also contributes to the global fight against this growing health threat. Through strategic planning, inclusive training, and sustainable support systems, such programs can create lasting impact—empowering a new generation of scientists to drive innovation and improve health outcomes in their communities and beyond.
Cite this article as (APA format):
AR Managing Editor (2025). Empowering Genomics Research in Africa: Bioinformatics Workshop Boosts AMR Surveillance Skills Using Open Web Tools. Retrieved from https://www.africanresearchers.org/empowering-genomics-research-in-africa-bioinformatics-workshop-boosts-amr-surveillance-skills-using-open-web-tools/
The African Research (AR) Index is a comprehensive scholarly directory and database focused explicitly on journal publishers that publish and disseminate African research.
